Comparative "Golgi" Proteome Study of Lolium multiflorum and Populus trichocarpa.
Identifieur interne : 001962 ( Main/Exploration ); précédent : 001961; suivant : 001963Comparative "Golgi" Proteome Study of Lolium multiflorum and Populus trichocarpa.
Auteurs : Kristina L. Ford [Australie] ; Tony Chin [Australie] ; Vaibhav Srivastava [Suède] ; Wei Zeng [Australie] ; Monika S. Doblin [Australie] ; Vincent Bulone [Suède, Australie] ; Antony Bacic [Australie]Source :
- Proteomes [ 2227-7382 ] ; 2016.
Abstract
The Golgi apparatus (GA) is a crucial organelle in the biosynthesis of non-cellulosic polysaccharides, glycoproteins and proteoglycans that are primarily destined for secretion to the cell surface (plasma membrane, cell wall and apoplast). Only a small proportion of the proteins involved in these processes have been identified in plants, with the majority of their functions still unknown. The availability of a GA proteome would greatly assist plant biochemists, cell and molecular biologists in determining the precise function of the cell wall-related proteins. There has been some progress towards defining the GA proteome in the model plant system Arabidopsis thaliana, yet in commercially important species, such as either the cereals or woody species there has been relatively less progress. In this study, we applied discontinuous sucrose gradient centrifugation to partially enrich GA from suspension cell cultures (SCCs) and combined this with stable isotope labelling (iTRAQ) to determine protein sub-cellular locations. Results from a representative grass species, Italian ryegrass (Lolium multiflorum) and a dicot species, black cottonwood (Populus trichocarpa) are compared. The results confirm that membrane fractionation approaches that provide effective GA-enriched fractions for proteomic analyses in Arabidopsis are much less effective in the species examined here and highlight the complexity of the GA, both within and between species.
DOI: 10.3390/proteomes4030023
PubMed: 28248233
PubMed Central: PMC5217351
Affiliations:
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Ford</name><affiliation wicri:level="4"><nlm:affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. kferg@unimelb.edu.au.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010</wicri:regionArea><orgName type="university">Université de Melbourne</orgName><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Chin, Tony" sort="Chin, Tony" uniqKey="Chin T" first="Tony" last="Chin">Tony Chin</name><affiliation wicri:level="4"><nlm:affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. tonyccm@gmail.com.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010</wicri:regionArea><orgName type="university">Université de Melbourne</orgName><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Srivastava, Vaibhav" sort="Srivastava, Vaibhav" uniqKey="Srivastava V" first="Vaibhav" last="Srivastava">Vaibhav Srivastava</name><affiliation wicri:level="1"><nlm:affiliation>Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden. vasri@kth.se.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm</wicri:regionArea><wicri:noRegion>106 91 Stockholm</wicri:noRegion></affiliation></author><author><name sortKey="Zeng, Wei" sort="Zeng, Wei" uniqKey="Zeng W" first="Wei" last="Zeng">Wei Zeng</name><affiliation wicri:level="4"><nlm:affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. zengw@unimelb.edu.au.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010</wicri:regionArea><orgName type="university">Université de Melbourne</orgName><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Doblin, Monika S" sort="Doblin, Monika S" uniqKey="Doblin M" first="Monika S" last="Doblin">Monika S. Doblin</name><affiliation wicri:level="4"><nlm:affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. msdoblin@unimelb.edu.au.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010</wicri:regionArea><orgName type="university">Université de Melbourne</orgName><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name><affiliation wicri:level="1"><nlm:affiliation>Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden. bulone@kth.se.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm</wicri:regionArea><wicri:noRegion>106 91 Stockholm</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia. bulone@kth.se.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064</wicri:regionArea><wicri:noRegion>SA 5064</wicri:noRegion></affiliation></author><author><name sortKey="Bacic, Antony" sort="Bacic, Antony" uniqKey="Bacic A" first="Antony" last="Bacic">Antony Bacic</name><affiliation wicri:level="4"><nlm:affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. abacic@unimelb.edu.au.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010</wicri:regionArea><orgName type="university">Université de Melbourne</orgName><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author></analytic><series><title level="j">Proteomes</title><idno type="ISSN">2227-7382</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Golgi apparatus (GA) is a crucial organelle in the biosynthesis of non-cellulosic polysaccharides, glycoproteins and proteoglycans that are primarily destined for secretion to the cell surface (plasma membrane, cell wall and apoplast). Only a small proportion of the proteins involved in these processes have been identified in plants, with the majority of their functions still unknown. The availability of a GA proteome would greatly assist plant biochemists, cell and molecular biologists in determining the precise function of the cell wall-related proteins. There has been some progress towards defining the GA proteome in the model plant system <i>Arabidopsis thaliana</i>, yet in commercially important species, such as either the cereals or woody species there has been relatively less progress. In this study, we applied discontinuous sucrose gradient centrifugation to partially enrich GA from suspension cell cultures (SCCs) and combined this with stable isotope labelling (iTRAQ) to determine protein sub-cellular locations. Results from a representative grass species, Italian ryegrass (<i>Lolium multiflorum</i>) and a dicot species, black cottonwood (<i>Populus trichocarpa</i>) are compared. The results confirm that membrane fractionation approaches that provide effective GA-enriched fractions for proteomic analyses in <i>Arabidopsis</i> are much less effective in the species examined here and highlight the complexity of the GA, both within and between species.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28248233</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2227-7382</ISSN><JournalIssue CitedMedium="Print"><Volume>4</Volume><Issue>3</Issue><PubDate><Year>2016</Year><Month>Jul</Month><Day>20</Day></PubDate></JournalIssue><Title>Proteomes</Title><ISOAbbreviation>Proteomes</ISOAbbreviation></Journal><ArticleTitle>Comparative "Golgi" Proteome Study of Lolium multiflorum and Populus trichocarpa.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E23</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/proteomes4030023</ELocationID><Abstract><AbstractText>The Golgi apparatus (GA) is a crucial organelle in the biosynthesis of non-cellulosic polysaccharides, glycoproteins and proteoglycans that are primarily destined for secretion to the cell surface (plasma membrane, cell wall and apoplast). Only a small proportion of the proteins involved in these processes have been identified in plants, with the majority of their functions still unknown. The availability of a GA proteome would greatly assist plant biochemists, cell and molecular biologists in determining the precise function of the cell wall-related proteins. There has been some progress towards defining the GA proteome in the model plant system <i>Arabidopsis thaliana</i>, yet in commercially important species, such as either the cereals or woody species there has been relatively less progress. In this study, we applied discontinuous sucrose gradient centrifugation to partially enrich GA from suspension cell cultures (SCCs) and combined this with stable isotope labelling (iTRAQ) to determine protein sub-cellular locations. Results from a representative grass species, Italian ryegrass (<i>Lolium multiflorum</i>) and a dicot species, black cottonwood (<i>Populus trichocarpa</i>) are compared. The results confirm that membrane fractionation approaches that provide effective GA-enriched fractions for proteomic analyses in <i>Arabidopsis</i> are much less effective in the species examined here and highlight the complexity of the GA, both within and between species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ford</LastName><ForeName>Kristina L</ForeName><Initials>KL</Initials><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. kferg@unimelb.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chin</LastName><ForeName>Tony</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. tonyccm@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Srivastava</LastName><ForeName>Vaibhav</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden. vasri@kth.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zeng</LastName><ForeName>Wei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. zengw@unimelb.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Doblin</LastName><ForeName>Monika S</ForeName><Initials>MS</Initials><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. msdoblin@unimelb.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bulone</LastName><ForeName>Vincent</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden. bulone@kth.se.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia. bulone@kth.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bacic</LastName><ForeName>Antony</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria 3010, Australia. abacic@unimelb.edu.au.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>07</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Proteomes</MedlineTA><NlmUniqueID>101621966</NlmUniqueID><ISSNLinking>2227-7382</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Golgi apparatus</Keyword><Keyword MajorTopicYN="N">quantitative proteomics</Keyword><Keyword MajorTopicYN="N">sub-cellular fractionation</Keyword><Keyword MajorTopicYN="N">subcellular proteomics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>05</Month><Day>23</Day></PubMedPubDate><PubMedPubDate 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Ford</name></region><name sortKey="Bacic, Antony" sort="Bacic, Antony" uniqKey="Bacic A" first="Antony" last="Bacic">Antony Bacic</name><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name><name sortKey="Chin, Tony" sort="Chin, Tony" uniqKey="Chin T" first="Tony" last="Chin">Tony Chin</name><name sortKey="Doblin, Monika S" sort="Doblin, Monika S" uniqKey="Doblin M" first="Monika S" last="Doblin">Monika S. Doblin</name><name sortKey="Zeng, Wei" sort="Zeng, Wei" uniqKey="Zeng W" first="Wei" last="Zeng">Wei Zeng</name></country><country name="Suède"><noRegion><name sortKey="Srivastava, Vaibhav" sort="Srivastava, Vaibhav" uniqKey="Srivastava V" first="Vaibhav" last="Srivastava">Vaibhav Srivastava</name></noRegion><name sortKey="Bulone, Vincent" sort="Bulone, Vincent" uniqKey="Bulone V" first="Vincent" last="Bulone">Vincent Bulone</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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